I had changed the Squads up quite a bit in the actual game, so I would like to know how to make that show up in Creation Center. It mentions before I open Creation Center, do I want to disable my squads, and I dont because they are already saved, and took a while to do. However, regardless of what I do it wont recognize the squads that are in the game

You can't see the changes you made in-game in the Creation Centre.

You can't see the changes you made in-game in the Creation Centre.
That really sucks, if I were to trade, just for example, Thierry Henry to Barcelona in Creation Center, and export that to the game, would it change the squads in the game?

You can transfer Henry to Barcelona with the Creation Centre but you will need to restart your career. Once you start a career you can't edit anything with the CC otherwise your game will crash. The info in your career file will not match the info in the game database and the conflict causes the crash.

You can transfer Henry to Barcelona with the Creation Centre but you will need to restart your career. Once you start a career you can't edit anything with the CC otherwise your game will crash. The info in your career file will not match the info in the game database and the conflict causes the crash.
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So if u make a squad and then get cc06 u have to make the squad again