I may be doing something wrong,but most of the edited kits I have need the unbadged patch to get rid of the double badge thing on the shirts,but this takes away the correct flags in the stands...any ideas??

If you're using my latest patch then you shouldn't have that problem if you've imported the new flag files.

What I did:

Go to edit team, strip, 1st strip, name on strip, edited strip and just remove the badge! Be sure to fix the numbers' type & colour. Do the same for 2nd strip.